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ABOUT THIS RECORD

ID: MNEST041593
species: Vitis vinifera
miRNA family: MIR167
source: miRBase, original name: vvi-MIR167c (MI0006517)

Taxonomy by NCBI:
Vitis vinifera Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGAAGCTGCCAGCATGATCTC

miRNA*
GATCATGTGGTAGCCTCACC

mismatches: 2
bulges: 1

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pre-miRNA
CAGTAGCAGTTGAAGCTGCCAGCATGATCTCAACTTCCCTATACAAGTCAAGGAAAGATCAGATCATGTGGTAGCCTCACCTGTTGATGGG

dot-bracket secondary structure
((.((((((.(((.(((((((.((((((((...(((.(((..........))).)))...))))))))))))))).))).)))))).))..


SIMILARITIES
miRBase tcc-MIR167a: 0.00000000007

PMRD vvi-miR167c: 1e-46

microPC miR167: 0.00000007
UniProt no hits

RFAM MIR167_1: 2e-45

Identical with: vvi-miR167c from PMRD (MNEST054799)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Array
deep sequencing data evidence

references

[1] Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro, Nature. 449:463-467(2007)., "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"
[2] Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS, BMC Genomics. 10:558(2009)., "High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera"




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