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ABOUT THIS RECORD

ID: MNEST041600
species: Vitis vinifera
miRNA family: MIR169_2
source: miRBase, original name: vvi-MIR169d (MI0006524)

Taxonomy by NCBI:
Vitis vinifera Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CAGCCAAGAATGATTTGCCGG

miRNA*
GGCAAGTTGTCCTTGGCTACA

mismatches: 4
bulges: 0

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pre-miRNA
GAGTGGAATGCAGCCAAGAATGATTTGCCGGAATTTATATATAGTGAGAAGAGAAGAGGCTATAGGCTTTCACATATATAGTGAACCCTGGCAAGTTGTC
CTTGGCTACA
TTTGATTCTC


dot-bracket secondary structure
((((.(((((.(((((((.(..(((((((((..(((((((((((((((.........(((.....)))))))).))))).)))))..)))))))))..).
))))))).))
))).))))..



SIMILARITIES
miRBase vvi-MIR169a: 1e-56

PMRD vvi-miR169d: 8e-64

microPC no hits
UniProt no hits

RFAM MIR169_2: 1e-62

Identical with: vvi-miR169d from PMRD (MNEST054806)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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deep sequencing data evidence

references

[1] Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro, Nature. 449:463-467(2007)., "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"




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