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ABOUT THIS RECORD

ID: MNEST041606
species: Vitis vinifera
miRNA family: MIR169
source: miRBase, original name: vvi-MIR169j (MI0006528)

Taxonomy by NCBI:
Vitis vinifera Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CAGCCAAGGATGACTTGCCGG

miRNA*
GGCAGGTTGTCCTTGGCTACC

mismatches: 3
bulges: 0

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pre-miRNA
GAGAGTGGAGTGCAGCCAAGGATGACTTGCCGGAATTCACATATAGAGTGGAATGAGGCAATAGACCGGCCTCTTCTCATGGTGTCCCTGGCAGGTTGTC
CTTGGCTACC
TTTCGCTCTCTT


dot-bracket secondary structure
((((((((((.(.(((((((((..(((((((((....(((.......((((((.(((((.........)))))))).))).)))...)))))))))..))
))))))).).
))))))))))..



SIMILARITIES
miRBase vvi-MIR169k: 2e-55

PMRD vvi-miR169j: 5e-65

microPC miR169: 0.00009
UniProt no hits

RFAM MIR169_2: 1e-62

Identical with: vvi-miR169j from PMRD (MNEST054812)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Array
deep sequencing data evidence

references

[1] Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro, Nature. 449:463-467(2007)., "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"
[2] Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS, BMC Genomics. 10:558(2009)., "High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera"




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