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ABOUT THIS RECORD

ID: MNEST041621
species: Vitis vinifera
miRNA family: MIR169_1
source: miRBase, original name: vvi-MIR169y (MI0006522)

Taxonomy by NCBI:
Vitis vinifera Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TAGCGAAGGATGACTTGCCTA

miRNA*
GGCAAGTCTCCTTGGCACC

mismatches: 3
bulges: 2

View larger
pre-miRNA
CGTTGTTTGGTAGCGAAGGATGACTTGCCTACAGCCTCCTTAAGGTTTCAAAATACCGAGCTTGTCTACCTTTGATCAAATGATTCAAGAAACAAAAGAA
AAGAAAGGCCATGGCAGCCATCCATCAGAGTCAACATGAGAATCATGTTCTATAGAAATTGGAGTCATTCTTGAGAATGAACACGACACTATTAGCTTGG
AATCTATAATGTGGTTTATGGCAAGTCTCCTTGGCACCTGATGGCCTC


dot-bracket secondary structure
.((..((.(((.((.(((((.((((((((...((((.(.((((((((........(((((((((((...(((.((((....)))).)))...........
......(((.......))).((((........((((((.....))))))..........)))).((((((....))))))....)))).....)))))))
))))).))).).))))...))))))))))))).))))).))..))...



SIMILARITIES
miRBase ptc-MIR169k: 0.0000008

PMRD vvi-miR169y: 7e-140

microPC no hits
UniProt no hits

RFAM MIR169_2: 1e-138

Identical with: vvi-miR169y from PMRD (MNEST054827)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: Array

references

[1] Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro, Nature. 449:463-467(2007)., "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"
[2] Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS, BMC Genomics. 10:558(2009)., "High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera"




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