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ABOUT THIS RECORD

ID: MNEST041628
species: Vitis vinifera
source: miRBase, original name: vvi-MIR171g (MI0007950)

Taxonomy by NCBI:
Vitis vinifera Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTGAGCCGAACCAATATCACC

miRNA*
CCATGTTGGTTCCATCGGTG

mismatches: 6
bulges: 1

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pre-miRNA
GCCAGCCTCTCCATGTTGGTTCCATCGGTGGGGGACACCAACTCCTTGAGCCGAACCAATATCACCCGAGCCAAAT

dot-bracket secondary structure
....(.(((...((((((((((..((((.((((........))))))))...)))))))))).....))).)....


SIMILARITIES
miRBase zma-MIR171k: 0.0008

PMRD vvi-miR171g: 8e-38

microPC miR171: 0.0008
UniProt no hits

RFAM no hits

Identical with: vvi-miR171g from PMRD (MNEST054834)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Array

references

[1] Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro, Nature. 449:463-467(2007)., "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"
[2] Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS, BMC Genomics. 10:558(2009)., "High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera"




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