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ABOUT THIS RECORD

ID: MNEST041630
species: Vitis vinifera
miRNA family: MIR171
source: miRBase, original name: vvi-MIR171i (MI0006543)

Taxonomy by NCBI:
Vitis vinifera Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGATTGAGCCGTGCCAATATC

miRNA*
TGTTGGAATGGCTCAATCAAA

mismatches: 1
bulges: 0

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pre-miRNA
GAAGAAGGTGGGGATGTTGGAATGGCTCAATCAAATCAAATCTCCCAAGGGTTTTGGGTCCTTTAATCTGATTGAGCCGTGCCAATATCATCATGTTCAC
TTC


dot-bracket secondary structure
...(((.(((..((((((((.((((((((((((.((.(((...((((((...))))))...))).)).)))))))))))).))))))))..))).)))..
...



SIMILARITIES
miRBase rco-MIR171e: 7e-33

PMRD vvi-miR171i: 9e-54

microPC miR171: 6e-21
UniProt no hits

RFAM MIR171_1: 4e-50

Identical with: vvi-miR171i from PMRD (MNEST054836)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Array, Solexa
deep sequencing data evidence

references

[1] Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro, Nature. 449:463-467(2007)., "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"
[2] Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS, BMC Genomics. 10:558(2009)., "High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera"




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