ABOUT THIS RECORDspecies: Vitis vinifera
miRNA family: MIR172
source: miRBase, original name: vvi-MIR172a (MI0006544)
Taxonomy by NCBI:
Vitis vinifera Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAATCTTGATGATGCTACAT miRNA* GCAGCATCATCAAGATTCTCA mismatches: 2 bulges: 0 |
pre-miRNA
TATTGCCGATGCAGCATCATCAAGATTCTCATCCTTGAAAAGTTTGGCAGAGATAACATCACCACCGTGCATTTGCATGTGAATCTTGATGATGCTACAT
GCGCAAACAA
dot-bracket secondary structure
..(((((.(((.((((((((((((((((................(((..((.......)).))).(((((....))))).)))))))))))))))).)))
).))))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
references
[1] Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro, Nature. 449:463-467(2007)., "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"
TATTGCCGATGCAGCATCATCAAGATTCTCATCCTTGAAAAGTTTGGCAGAGATAACATCACCACCGTGCATTTGCATGTGAATCTTGATGATGCTACAT
GCGCAAACAA
dot-bracket secondary structure
..(((((.(((.((((((((((((((((................(((..((.......)).))).(((((....))))).)))))))))))))))).)))
).))))....
SIMILARITIES| miRBase tcc-MIR172e: 6e-18 PMRD vvi-miR172a: 6e-58 microPC miR172: 0.000001 | UniProt no hits RFAM mir-172: 1e-56 |
Identical with: vvi-miR172a from PMRD (MNEST054837) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
references
[1] Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro, Nature. 449:463-467(2007)., "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"
