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ABOUT THIS RECORD

ID: MNEST041639
species: Vitis vinifera
miRNA family: MIR319
source: miRBase, original name: vvi-MIR319g (MI0006551)

Taxonomy by NCBI:
Vitis vinifera Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTGGACTGAAGGGAGCTCCCA

miRNA*
AGAGCTCCTTTTAGTCCAATA

mismatches: 3
bulges: 0

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pre-miRNA
GAACAGCTGAAGAGCTCCTTTTAGTCCAATAAAGAGGGCTGAGGGGCGGCCAGAGCTGCCATCTCATGCACTTGGCTATGCTTATTCTTTTCTCAATCAA
TTCGGTTCGAGTATGGCTGTGGAGTGACAAATGCTAAGTTTAGCCTGATGCATGACATGGGAGCAACTCCTCCGCACGCTTTGCCCACTCATTGGACTGA
AGGGAGCTCCCA
GGGCAGATCT


dot-bracket secondary structure
.....(((...(((((((((((((((((((..((.((((.(((.(((((..((.(((.((((.(((((((...(((((.(((((.((.((((.((..(((
((((...))))).))..)).)))).)).......))))).)))))...))))))).)))).)))..))...)))).).))).)))).)).))))))))))
)))))))))...
.)))......



SIMILARITIES
miRBase ptc-MIR319h: 2e-16

PMRD vvi-miR319g: 2e-124

microPC miR319: 0.0007
UniProt no hits

RFAM MIR159: 4e-123

Identical with: vvi-miR319g from PMRD (MNEST054847)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Array, Solexa

references

[1] Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro, Nature. 449:463-467(2007)., "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"
[2] Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS, BMC Genomics. 10:558(2009)., "High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera"




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