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ABOUT THIS RECORD

ID: MNEST041640
species: Vitis vinifera
miRNA family: MIR390
source: miRBase, original name: vvi-MIR390 (MI0006552)

Taxonomy by NCBI:
Vitis vinifera Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
AAGCTCAGGAGGGATAGCGCC

miRNA*
CGCTATCTATCCTGAGTTTCA

mismatches: 1
bulges: 0

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pre-miRNA
AGAATCTGTTAAGCTCAGGAGGGATAGCGCCATGAGCCATGATGAAAATGATTGTTGAGTTGAAAATTTTTTCTAGCTTGTTTTTTGGGTCATCATTTTG
TGTGTGTGGCGCTATCTATCCTGAGTTTCACGGGTTCTTC


dot-bracket secondary structure
(((((((((.((((((((((.(((((((((((((.((.(((((((...(((....((((((((((....)))).))))))....)))..)))))))...)
)...))))))))))))).)))))))))).)))))))))..



SIMILARITIES
miRBase ptc-MIR390a: 0.00000000000003

PMRD vvi-miR390: 1e-75

microPC miR390: 0.000002
UniProt no hits

RFAM MIR390: 2e-74

Identical with: vvi-miR390 from PMRD (MNEST054848)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: Array, Solexa
deep sequencing data evidence

references

[1] Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro, Nature. 449:463-467(2007)., "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"
[2] Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS, BMC Genomics. 10:558(2009)., "High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera"




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