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ABOUT THIS RECORD

ID: MNEST041642
species: Vitis vinifera
miRNA family: MIR393
source: miRBase, original name: vvi-MIR393b (MI0006553)

Taxonomy by NCBI:
Vitis vinifera Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCCAAAGGGATCGCATTGATC

miRNA*
TCATGCTATCCCTTTGGATT

mismatches: 1
bulges: 1

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pre-miRNA
GGAGGAGGCATCCAAAGGGATCGCATTGATCCCAAACTCTCCATGTCTTTGGATCATGCTATCCCTTTGGATTCCTCCTTTGG

dot-bracket secondary structure
((((((((.((((((((((((.((((.(((((.(((..(.....)..)))))))))))).)))))))))))).))))))))..


SIMILARITIES
miRBase ptc-MIR393a: 0.00000000000007

PMRD vvi-miR393b: 6e-42

microPC miR393: 0.00000006
UniProt no hits

RFAM no hits

Identical with: vvi-miR393b from PMRD (MNEST054850)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: Array, Solexa

references

[1] Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro, Nature. 449:463-467(2007)., "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"
[2] Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS, BMC Genomics. 10:558(2009)., "High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera"




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