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ABOUT THIS RECORD

ID: MNEST041651
species: Vitis vinifera
miRNA family: MIR395
source: miRBase, original name: vvi-MIR395f (MI0006561)

Taxonomy by NCBI:
Vitis vinifera Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CTGAAGTGTTTGGGGGAACTC

miRNA*
GTTCCCCTGACCACTTCACTG

mismatches: 4
bulges: 0

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pre-miRNA
GTACCCTAGAGTTCCCCTGACCACTTCACTGGGGATCTTCTCTAATGACTTCCCACTGAAGTGTTTGGGGGAACTCCTGGTGTCAT

dot-bracket secondary structure
(.((((..(((((((((..(.(((((((.((((((((.........)).)))))).))))))).)..)))))))))..)).)))..


SIMILARITIES
miRBase vvi-MIR395j: 4e-37

PMRD vvi-miR395f: 1e-43

microPC miR395: 0.00006
UniProt no hits

RFAM mir-395: 7e-36

Identical with: vvi-miR395f from PMRD (MNEST054859)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Array
deep sequencing data evidence

references

[1] Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro, Nature. 449:463-467(2007)., "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"
[2] Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS, BMC Genomics. 10:558(2009)., "High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera"




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