ABOUT THIS RECORDspecies: Vitis vinifera
miRNA family: MIR398
source: miRBase, original name: vvi-MIR398a (MI0006572)
Taxonomy by NCBI:
Vitis vinifera Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTGTTCTCAGGTCACCCCTT miRNA* GGAGTGGCACCTGAGAACACCGG mismatches: 2 bulges: 2 |
pre-miRNA
ACACCCCAAGGGAGTGGCACCTGAGAACACCGGTTGTGTTGGCTGCGCCAAGCTCTGCTAGCTAATGCATTTTGTGTTCTCAGGTCACCCCTTTGGGGCA
CCA
dot-bracket secondary structure
...(((((((((.(((..((((((((((((..(.(((((((((((.((........))))))))))))).)..))))))))))))))).)))))))))..
...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Array
references
[1] Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro, Nature. 449:463-467(2007)., "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"
[2] Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS, BMC Genomics. 10:558(2009)., "High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera"
ACACCCCAAGGGAGTGGCACCTGAGAACACCGGTTGTGTTGGCTGCGCCAAGCTCTGCTAGCTAATGCATTTTGTGTTCTCAGGTCACCCCTTTGGGGCA
CCA
dot-bracket secondary structure
...(((((((((.(((..((((((((((((..(.(((((((((((.((........))))))))))))).)..))))))))))))))).)))))))))..
...
SIMILARITIES| miRBase ptc-MIR398a: 0.0000000003 PMRD vvi-miR398a: 9e-54 microPC miR398: 0.0000003 | UniProt no hits RFAM MIR398: 2e-52 |
Identical with: vvi-miR398a from PMRD (MNEST054874) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Array
references
[1] Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro, Nature. 449:463-467(2007)., "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"
[2] Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS, BMC Genomics. 10:558(2009)., "High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera"
