ABOUT THIS RECORDspecies: Vitis vinifera
miRNA family: MIR398
source: miRBase, original name: vvi-MIR398b (MI0007958)
Taxonomy by NCBI:
Vitis vinifera Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTGTTCTCAGGTCGCCCCTG miRNA* GGTGTGACCTGAGAATCACATG mismatches: 1 bulges: 1 |
pre-miRNA
GTGTCCTACAGGTGTGACCTGAGAATCACATGCCCGCACCACCCATCTTTGCTCTCATGTGTTCTCAGGTCGCCCCTGCTGGACTCCC
dot-bracket secondary structure
..((((..((((.((((((((((((.((((((...(((...........)))...)))))))))))))))))).))))..))))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Array, Solexa
references
[1] Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro, Nature. 449:463-467(2007)., "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"
[2] Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS, BMC Genomics. 10:558(2009)., "High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera"
GTGTCCTACAGGTGTGACCTGAGAATCACATGCCCGCACCACCCATCTTTGCTCTCATGTGTTCTCAGGTCGCCCCTGCTGGACTCCC
dot-bracket secondary structure
..((((..((((.((((((((((((.((((((...(((...........)))...)))))))))))))))))).))))..))))....
SIMILARITIES| miRBase vvi-MIR398c: 4e-40 PMRD vvi-miR398b: 7e-45 microPC miR398: 0.0000003 | UniProt no hits RFAM MIR398: 7e-39 |
Identical with: vvi-miR398b from PMRD (MNEST054875) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Array, Solexa
references
[1] Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro, Nature. 449:463-467(2007)., "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"
[2] Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS, BMC Genomics. 10:558(2009)., "High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera"
