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ABOUT THIS RECORD

ID: MNEST041672
species: Vitis vinifera
miRNA family: MIR399
source: miRBase, original name: vvi-MIR399e (MI0006575)

Taxonomy by NCBI:
Vitis vinifera Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGCCAAAGGAGATTTGCCCGG

miRNA*
GGGCAAATTATCTTTTGGCAGG

mismatches: 2
bulges: 1

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pre-miRNA
GCATATTACAGGGCAAATTATCTTTTGGCAGGCAGCCACTTAGAGACACAGCCAAGCCATGCATTCTTGTAGTGTGCCCTCTGCCAAAGGAGATTTGCCC
GG
CAATTCTTCT


dot-bracket secondary structure
..........(((((((((.((((((((((((..((((((..((((....((........))..))))..)))).))..)))))))))))))))))))))
..
..........



SIMILARITIES
miRBase tcc-MIR399b: 1e-16

PMRD vvi-miR399e: 4e-59

microPC miR399: 0.000001
UniProt no hits

RFAM mir-399: 7e-58

Identical with: vvi-miR399e from PMRD (MNEST054881)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro, Nature. 449:463-467(2007)., "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"




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