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ABOUT THIS RECORD

ID: MNEST041687
species: Vitis vinifera
miRNA family: MIR482
source: miRBase, original name: vvi-MIR482 (MI0007971)

Taxonomy by NCBI:
Vitis vinifera Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCTTTCCTACTCCTCCCATTCC

miRNA*
AATTGGAGAGTAGGAAAGCTT

mismatches: 2
bulges: 1

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pre-miRNA
AATGTTTGGGAATTGGAGAGTAGGAAAGCTTAGCCATCTATTCCCTTCATGGTTTCCTCTCCATGGATTGGGGGTCTAGAGCTAGTCTTTCCTACTCCTC
CCATTCC
TATTGTTTTC


dot-bracket secondary structure
......(((((((.((((((((((((((.(((((..((((..((((((((((........))))))....))))..))))))))).)))))))))).)))
).)))))
))........



SIMILARITIES
miRBase pab-MIR482c: 0.000000002

PMRD vvi-miR482: 5e-62

microPC miR482: 0.000001
UniProt no hits

RFAM no hits

Identical with: vvi-miR482 from PMRD (MNEST054895)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: Solexa
deep sequencing data evidence

references

[1] Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro, Nature. 449:463-467(2007)., "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"
[2] Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS, BMC Genomics. 10:558(2009)., "High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera"




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