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ABOUT THIS RECORD

ID: MNEST041688
species: Vitis vinifera
miRNA family: MIR535
source: miRBase, original name: vvi-MIR535a (MI0006580)

Taxonomy by NCBI:
Vitis vinifera Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGACAACGAGAGAGAGCACGC

miRNA*
GTGCTCTCTCTCGCTGTCATA

mismatches: 1
bulges: 0

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pre-miRNA
TGTAATTGCTTGACAACGAGAGAGAGCACGCTAGTCAGCATTCATGCGAGGAACATGACTGTGTACAGGCGTGCTCTCTCTCGCTGTCATACAATCTTCT
C


dot-bracket secondary structure
....((((..(((((.((((((((((((((((.((..(((.(((((.......))))).)))..)).)))))))))))))))).)))))..)))).....
.



SIMILARITIES
miRBase vvi-MIR535b: 1e-52

PMRD vvi-miR535c: 1e-52

microPC miR535: 0.00000000008
UniProt no hits

RFAM MIR535: 1e-34

Identical with: vvi-MIR535b from miRBase (MNEST041689)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: Array, Solexa
deep sequencing data evidence

references

[1] Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro, Nature. 449:463-467(2007)., "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"
[2] Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS, BMC Genomics. 10:558(2009)., "High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera"




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