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ABOUT THIS RECORD

ID: MNEST041691
species: Vitis vinifera
miRNA family: MIR828
source: miRBase, original name: vvi-MIR828a (MI0007972)

Taxonomy by NCBI:
Vitis vinifera Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCTTGCTCAAATGAGTATTCCA

miRNA*
AGATGCTCATTTGAGGAAGCAA

mismatches: 4
bulges: 0

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pre-miRNA
TATAAAGTTTCTTGCTCAAATGAGTATTCCAAACAACAGCTTGTGAAGCAATGATTACTGTCATAGTCTCTGCATGTGGATTGTTGTTGAGATGCTCATT
TGAGGAAGCAA
CCTTAAAAATG


dot-bracket secondary structure
..(((.(((.(((.(((((((((((((..(((.(((((((((((((..(.(((((....))))).)..)).)))...)).)))))))))..)))))))))
)))).))).))
).)))......



SIMILARITIES
miRBase vvi-MIR828b: 0.00009

PMRD vvi-miR828a: 5e-65

microPC no hits
UniProt no hits

RFAM MIR828: 8e-55

Identical with: vvi-miR828a from PMRD (MNEST054901)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro, Nature. 449:463-467(2007)., "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"




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