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ABOUT THIS RECORD

ID: MNEST041692
species: Vitis vinifera
miRNA family: MIR828
source: miRBase, original name: vvi-MIR828b (MI0007973)

Taxonomy by NCBI:
Vitis vinifera Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCTTGCTCAAATGAGTGTTCCA

miRNA*
GATAGTCATTTCCTGCAAAA

mismatches: 3
bulges: 4

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pre-miRNA
GCTCTTGGTTTCTTGCTCAAATGAGTGTTCCACATCAACCTGGATAGTCATTTCCTGCAAAACCAGGTTTCT

dot-bracket secondary structure
...((((((((..(((..((((((.(((.(((........)))))).))))))...))))))))))).....


SIMILARITIES
miRBase vvi-MIR828a: 0.00005

PMRD vvi-miR828b: 2e-35

microPC no hits
UniProt no hits

RFAM MIR828: 1e-27

Identical with: vvi-miR828b from PMRD (MNEST054902)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
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references

[1] Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro, Nature. 449:463-467(2007)., "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"




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