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ABOUT THIS RECORD

ID: MNEST041697
species: Vitis vinifera
miRNA family: MIR845_2
source: miRBase, original name: vvi-MIR845e (MI0007978)

Taxonomy by NCBI:
Vitis vinifera Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGGCTCTGATACCAATTGATG

miRNA*
TTAATTATCCCTAGGGCCATG

mismatches: 5
bulges: 0

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pre-miRNA
AGAACGCACATTAATTATCCCTAGGGCCATGGGATAAACAAAAACCTTGAAAAAACAAGTTAGCACACCCTAGAATGGTTCTAGCACGATTACTAACCTA
TGGCTCTGATACCAATTGATG
GGAAAAACTC


dot-bracket secondary structure
........((((((((.....((((((((((((............((((......))))..........(((((.....)))))............))))
)))))))).....))))))))
..........



SIMILARITIES
miRBase vvi-MIR845d: 5e-53

PMRD vvi-miR845e: 2e-70

microPC no hits
UniProt no hits

RFAM MIR845_2: 2e-49

Identical with: vvi-miR845e from PMRD (MNEST054907)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
additional data
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references

[1] Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro, Nature. 449:463-467(2007)., "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"




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