ABOUT THIS RECORDspecies: Vitis vinifera
miRNA family: MIR2111
source: miRBase, original name: vvi-MIR2111 (MI0015370)
Taxonomy by NCBI:
Vitis vinifera Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAATCTGCATCCTGAGGTCTA miRNA* GTCCTCTGGTTGCAGATTACT mismatches: 3 bulges: 0 |
pre-miRNA
GCAATATTGGGTCAGGATCGGGTAATCTGCATCCTGAGGTCTAGATAAGTATATCTCCGTTGCAGCTAGTCCTCTGGTTGCAGATTACTTCTTCCTCACT
GCCAATGC
dot-bracket secondary structure
....((((((((.((((..((((((((((((.((.((((.((((....(((.........)))..)))).)))).)).))))))))))))..)))).)).
.)))))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Hsieh LC, Lin SI, Shih AC, Chen JW, Lin WY, Tseng CY, Li WH, Chiou TJ, Plant Physiol. 151:2120-2132(2009)., "Uncovering small RNA-mediated responses to phosphate deficiency in Arabidopsis by deep sequencing"
GCAATATTGGGTCAGGATCGGGTAATCTGCATCCTGAGGTCTAGATAAGTATATCTCCGTTGCAGCTAGTCCTCTGGTTGCAGATTACTTCTTCCTCACT
GCCAATGC
dot-bracket secondary structure
....((((((((.((((..((((((((((((.((.((((.((((....(((.........)))..)))).)))).)).))))))))))))..)))).)).
.)))))).
SIMILARITIES| miRBase aly-MIR2111a: 0.00000002 PMRD ptc-miRf11953-akr: 0.000005 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Hsieh LC, Lin SI, Shih AC, Chen JW, Lin WY, Tseng CY, Li WH, Chiou TJ, Plant Physiol. 151:2120-2132(2009)., "Uncovering small RNA-mediated responses to phosphate deficiency in Arabidopsis by deep sequencing"
