ABOUT THIS RECORDspecies: Vitis vinifera
miRNA family: MIR2950
source: miRBase, original name: vvi-MIR2950 (MI0016016)
Taxonomy by NCBI:
Vitis vinifera Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCCATCTCTTGCACACTGGA miRNA* TGGTGTGCACGGGATGGAATA mismatches: 3 bulges: 0 |
pre-miRNA
TGGCTTACATGGGCTTGTGATGTATTCCATCTCTTGCACACTGGACCAGCGCTCCAGCTGCAGTTTGGTGTGCACGGGATGGAATACATCATGGATTCAT
GATGTGG
dot-bracket secondary structure
.......((((((.(..((((((((((((((((.(((((((..(((((((......))))..)))..))))))).))))))))))))))))..).)))))
)......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, Dalmay T, Burgyan J, Plant J. 62:960-976(2010)., "Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis"
TGGCTTACATGGGCTTGTGATGTATTCCATCTCTTGCACACTGGACCAGCGCTCCAGCTGCAGTTTGGTGTGCACGGGATGGAATACATCATGGATTCAT
GATGTGG
dot-bracket secondary structure
.......((((((.(..((((((((((((((((.(((((((..(((((((......))))..)))..))))))).))))))))))))))))..).)))))
)......
SIMILARITIES| miRBase ghr-MIR2950: 0.000001 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, Dalmay T, Burgyan J, Plant J. 62:960-976(2010)., "Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis"
