ABOUT THIS RECORDspecies: Vitis vinifera
miRNA family: miR3623
source: miRBase, original name: vvi-MIR3623 (MI0016015)
Taxonomy by NCBI:
Vitis vinifera Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGTGCTTGGACGAATTTGCTA miRNA* ACAAGTTCATCCAAGCACCATC mismatches: 3 bulges: 0 |
pre-miRNA
AAGAATTTTGATGATCTTCACAAGTTCATCCAAGCACCATCTAAAGCTCAAACAGGCCTACGGTTTTCTTCAAAACTAGGCTTATTCATGATGGTGCTTG
GACGAATTTGCTAAGAACATTAAGTTCTT
dot-bracket secondary structure
((((((((.((((.((((..(((((((.(((((((((((((............((((((..((((((....))))))))))))......)))))))))))
)).)))))))..)))).))))))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, Dalmay T, Burgyan J, Plant J. 62:960-976(2010)., "Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis"
AAGAATTTTGATGATCTTCACAAGTTCATCCAAGCACCATCTAAAGCTCAAACAGGCCTACGGTTTTCTTCAAAACTAGGCTTATTCATGATGGTGCTTG
GACGAATTTGCTAAGAACATTAAGTTCTT
dot-bracket secondary structure
((((((((.((((.((((..(((((((.(((((((((((((............((((((..((((((....))))))))))))......)))))))))))
)).)))))))..)))).))))))))))))
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, Dalmay T, Burgyan J, Plant J. 62:960-976(2010)., "Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis"
