ABOUT THIS RECORDspecies: Vitis vinifera
source: miRBase, original name: vvi-MIR3627 (MI0016020)
Taxonomy by NCBI:
Vitis vinifera Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGTCGCAGGAGAGACGGCACT miRNA* CGCCGCTCTCCTGTGACAAGA mismatches: 2 bulges: 1 |
pre-miRNA
GAAGGAAAGCGAGAAAGAAAGAGGGGTTGGGGGTTTCTTGTCGCAGGAGAGACGGCACTTGCTCTTGTGTAGCAAATTGCAAGCGGCAATCGCCGCTCTC
CTGTGACAAGATACCCTTCAGCTTCTTTCCTACATTCTTCGCCCTAC
dot-bracket secondary structure
..(((...(((((((.(..(((((((((((((((.((((((((((((((((.((((..(((((((((((........)))))).)))))..)))))))))
))))))))))).)))).)))))))))))....).))).)))))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, Dalmay T, Burgyan J, Plant J. 62:960-976(2010)., "Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis"
GAAGGAAAGCGAGAAAGAAAGAGGGGTTGGGGGTTTCTTGTCGCAGGAGAGACGGCACTTGCTCTTGTGTAGCAAATTGCAAGCGGCAATCGCCGCTCTC
CTGTGACAAGATACCCTTCAGCTTCTTTCCTACATTCTTCGCCCTAC
dot-bracket secondary structure
..(((...(((((((.(..(((((((((((((((.((((((((((((((((.((((..(((((((((((........)))))).)))))..)))))))))
))))))))))).)))).)))))))))))....).))).)))))))..
SIMILARITIES| miRBase no hits PMRD ptc-miRf11324-akr: 0.0000001 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, Dalmay T, Burgyan J, Plant J. 62:960-976(2010)., "Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis"
