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ABOUT THIS RECORD

ID: MNEST041706
species: Vitis vinifera
source: miRBase, original name: vvi-MIR3629a (MI0016022)

Taxonomy by NCBI:
Vitis vinifera Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GGCTGCTGAGAAAATGTAGGA

miRNA*
CCGCATTTTCTCAGCAGCCAA

mismatches: 2
bulges: 0

View larger
pre-miRNA
TTTTTTTTTCCCGCATTTTCTCAGCAGCCAAGCAGAGTGTGGGGTTTAAGAGATTATCGACTTGGATTGTGCTGCTAGTTGCTGCACATTTTCTGGGTTT
CAAGTGGTTCCAACTGGGTTTGGATTTGTATCTCTCCGTTTATCACTTAGTTTGGCTGCTGAGAAAATGTAGGAAAAAGAAA


dot-bracket secondary structure
.((((((((((..((((((((((((((((((((.(((((.(.((....(((((.....((((..((.(((((.((.....)).)))))...))..)))).
...(..(.(((((......))))).)..).))))))).)....))))).))))))))))))))))))))..)))))))))).



SIMILARITIES
miRBase vvi-MIR3629c: 0.00000001

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: Solexa

references

[1] Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, Dalmay T, Burgyan J, Plant J. 62:960-976(2010)., "Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis"




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