ABOUT THIS RECORDspecies: Vitis vinifera
source: miRBase, original name: vvi-MIR3629c (MI0016024)
Taxonomy by NCBI:
Vitis vinifera Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGCTGCTGAGAAAATGTAGGA miRNA* CTTTCATTTCTCAGTAACCAA mismatches: 2 bulges: 2 |
pre-miRNA
TCTGTTTGGCTGCTGAGAAAATGTAGGAAAAGCGATGAAGCTTGAGGACATAAAAATAGGTTGGGTTTGAGACGGCTGTTGCCCTCTTTCCTTTTCCTTT
CATTTCTCAGTAACCAAAGGGA
dot-bracket secondary structure
(((.(((((.((((((((((.((.((((((((.((..(((((..(...............)..)))))((((.(((....))).))))))))))))))..
)))))))))))).))))).)))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: Solexa
references
[1] Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, Dalmay T, Burgyan J, Plant J. 62:960-976(2010)., "Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis"
TCTGTTTGGCTGCTGAGAAAATGTAGGAAAAGCGATGAAGCTTGAGGACATAAAAATAGGTTGGGTTTGAGACGGCTGTTGCCCTCTTTCCTTTTCCTTT
CATTTCTCAGTAACCAAAGGGA
dot-bracket secondary structure
(((.(((((.((((((((((.((.((((((((.((..(((((..(...............)..)))))((((.(((....))).))))))))))))))..
)))))))))))).))))).)))
SIMILARITIES| miRBase vvi-MIR3629a: 0.000000006 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: Solexa
references
[1] Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, Dalmay T, Burgyan J, Plant J. 62:960-976(2010)., "Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis"
