ABOUT THIS RECORDspecies: Vitis vinifera
source: miRBase, original name: vvi-MIR3630 (MI0016026)
Taxonomy by NCBI:
Vitis vinifera Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCAAGTGACGATATCAGACA miRNA* GGAATCTCTCTGATGCACA mismatches: 2 bulges: 6 |
pre-miRNA
CAGTATGGTTGTGCAAGTGACGATATCAGACAGGGACATCAGCACCTCCAATGGAGAATGATGATTTGTCTTTGGGAATCTCTCTGATGCACAAGCATAT
TG
dot-bracket secondary structure
(((((((.(((((((((.((.(((.((...(((((((((((.((.((((...))))..)).)))..)))))))).))))))).))..))))))).)))))
))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, Dalmay T, Burgyan J, Plant J. 62:960-976(2010)., "Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis"
CAGTATGGTTGTGCAAGTGACGATATCAGACAGGGACATCAGCACCTCCAATGGAGAATGATGATTTGTCTTTGGGAATCTCTCTGATGCACAAGCATAT
TG
dot-bracket secondary structure
(((((((.(((((((((.((.(((.((...(((((((((((.((.((((...))))..)).)))..)))))))).))))))).))..))))))).)))))
))
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM snoR44_J54: 3e-41 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, Dalmay T, Burgyan J, Plant J. 62:960-976(2010)., "Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis"
