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ABOUT THIS RECORD

ID: MNEST041713
species: Vitis vinifera
miRNA family: MIR3631
source: miRBase, original name: vvi-MIR3631d (MI0016030)

Taxonomy by NCBI:
Vitis vinifera Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CATGTTGACATCATCCAATATA

miRNA*
TATTTATTGATATTAATAAGTT

mismatches: 5
bulges: 0

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pre-miRNA
TAAAAGTAACCTATTAATATCAACCAACATAATTAAAAGTGAACTTGTTATTATCAATAAGTTTAGTTTAGTTATATTTATTGATATTAATAAGTTACTT
TTAACGGAATAGGAAAAACTAAGGTGATGTTTGTTTTTAGTTTTTTCTATTCAGATAAAAGTAACATGTTGACATCATCCAATATAATTAAACTGAACAT
ATAACAAGTTCATTTTAATTATGTTGGATAATATCAATAGATTACTTTTA


dot-bracket secondary structure
(((((((((.(((((.((((...(((((((((((((((.((((((((((((.........((((((((((((((((((...((((.((((((.(((((((
(((.(.((((((((((((((((((..........)))))))))))))))))).).)))))))))).)))))).))))...))))))))))))))))))..
)))))))))))))))))))))))))))...)))).))))).)))))))))



SIMILARITIES
miRBase vvi-MIR3631b: 1e-24

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence

references

[1] Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, Dalmay T, Burgyan J, Plant J. 62:960-976(2010)., "Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis"




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