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ABOUT THIS RECORD

ID: MNEST041925
species: Oryza sativa
miRNA family: MIR160
source: miRBase, original name: osa-MIR160c (MI0000665)

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGCCTGGCTCCCTGTATGCCA

miRNA*
GCGTGCACGGAGCCAAGCATA

mismatches: 2
bulges: 0

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pre-miRNA
GGAATGTGCCTGGCTCCCTGTATGCCACTCATCTAGAGCAACAAACTTCTGCGAGAGGTTGCCTATGATGGATGGCGTGCACGGAGCCAAGCATATTCC

dot-bracket secondary structure
(((((((((.(((((((.(((((((((..(((((((.(((((...(((....)))..)))))))).))))..))))))))).))))))).)))))))))


SIMILARITIES
miRBase bdi-MIR160d: 4e-22

PMRD osa-miR160c: 2e-51

microPC miR160: 5e-43
UniProt no hits

RFAM mir-160: 1e-46

Identical with: miR160 from microPC (MNEST046227)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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deep sequencing data evidence

references

[1] Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP, Genes Dev. 16:1616-1626(2002)., "MicroRNAs in plants"




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