ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR160
source: miRBase, original name: osa-MIR160f (MI0001101)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCTGGCTCCCTGAATGCCA miRNA* GCATTGAGGGAGTCATGCAGG mismatches: 2 bulges: 0 |
pre-miRNA
GGATTAACGCTGCCTGGCTCCCTGAATGCCATCCGAGAAGCGTGCCGCTGTGGCCGGCTGCTTCCTGGTTGGCATTGAGGGAGTCATGCAGGGTTTGCTC
dot-bracket secondary structure
((...(((.((((.(((((((((.(((((((.(((.((((((.(((((....).)))))))))).))).))))))).))))))))).)))).)))..)).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"
GGATTAACGCTGCCTGGCTCCCTGAATGCCATCCGAGAAGCGTGCCGCTGTGGCCGGCTGCTTCCTGGTTGGCATTGAGGGAGTCATGCAGGGTTTGCTC
dot-bracket secondary structure
((...(((.((((.(((((((((.(((((((.(((.((((((.(((((....).)))))))))).))).))))))).))))))))).)))).)))..)).
SIMILARITIES| miRBase bdi-MIR160e: 0.000000000000001 PMRD osa-miR160f: 5e-52 microPC miR160: 0.0003 | UniProt no hits RFAM mir-160: 2e-42 |
Identical with: osa-miRf11345-akr from PMRD (MNEST050560) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"
