ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR162
source: miRBase, original name: osa-MIR162a (MI0000667)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGATAAACCTCTGCATCCAG miRNA* GGGCGCAGTGGTTTATCGATC mismatches: 3 bulges: 0 |
pre-miRNA
GGTGATGCCTGGGCGCAGTGGTTTATCGATCCCTTCCCTGCCTTGTGGCGCTGATCCAGGAGCGGCGAATTTCTTTGAGAGGGTGTTCTTTTTTTTTCTT
CCTTTTGGTCCTTGTTGCAGCCAACGACAACGCGGGAATCGATCGATAAACCTCTGCATCCAGTTCTCGCC
dot-bracket secondary structure
(((((...((((..((((.((((((((((((..(((((.((.(((((((.(((...)))..(((((((......(..((((((................)
)))))..)...))))))).)))....)))).)))))))..)))))))))))).))))..))))...)))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP, Genes Dev. 16:1616-1626(2002)., "MicroRNAs in plants"
GGTGATGCCTGGGCGCAGTGGTTTATCGATCCCTTCCCTGCCTTGTGGCGCTGATCCAGGAGCGGCGAATTTCTTTGAGAGGGTGTTCTTTTTTTTTCTT
CCTTTTGGTCCTTGTTGCAGCCAACGACAACGCGGGAATCGATCGATAAACCTCTGCATCCAGTTCTCGCC
dot-bracket secondary structure
(((((...((((..((((.((((((((((((..(((((.((.(((((((.(((...)))..(((((((......(..((((((................)
)))))..)...))))))).)))....)))).)))))))..)))))))))))).))))..))))...)))))
SIMILARITIES| miRBase osa-MIR162b: 1e-17 PMRD osa-miR162a: 5e-78 microPC miR162: 0.0000000000006 | UniProt no hits RFAM MIR162_2: 6e-69 |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP, Genes Dev. 16:1616-1626(2002)., "MicroRNAs in plants"
