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ABOUT THIS RECORD

ID: MNEST041930
species: Oryza sativa
miRNA family: MIR162
source: miRBase, original name: osa-MIR162b (MI0001102)

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCGATAAGCCTCTGCATCCAG

miRNA*
GGGCGCAGTGGTTTATCGATC

mismatches: 3
bulges: 0

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pre-miRNA
TGGGTGATGCCTGGGCGCAGTGGTTTATCGATCTCTTCCCTGCCTTGTGCTGCTCCGATCGATGCCCGTGCTGATTCTTGATAATATACAACGCAGGAAT
CGATCGATAAGCCTCTGCATCCAGATCTCACTTT


dot-bracket secondary structure
.((((((...((((..((((.((((((((((((..((((.(((.(((((....((.(((((..((....)))))))...)).....))))).))))))).
.)))))))))))).))))..))))...)))))).



SIMILARITIES
miRBase osa-MIR162a: 8e-18

PMRD osa-miR162b: 4e-72

microPC miR162: 3e-60
UniProt no hits

RFAM MIR162_2: 1e-60

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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deep sequencing data evidence

references

[1] Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"




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