ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR164
source: miRBase, original name: osa-MIR164e (MI0001105)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGAGAAGCAGGGCACGTGAG miRNA* CATGTGTCCGTCTTCTCCACC mismatches: 2 bulges: 0 |
pre-miRNA
TTGTGCAGGGTGGAGAAGCAGGGCACGTGAGCGGCCATCCAGTGTAGCTTCGCTGCGCGTCCATGGCGGCGAACGCGCGTGATCTGGAGTTTGGATGGTC
GTTCATGTGTCCGTCTTCTCCACCGAGCACTG
dot-bracket secondary structure
..((((..((((((((((..((((((((((((((((((((((((((((...))))))).(((((.(((((....)).))).)..))))...)))))))))
))))))))))))..))))))))))..))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"
TTGTGCAGGGTGGAGAAGCAGGGCACGTGAGCGGCCATCCAGTGTAGCTTCGCTGCGCGTCCATGGCGGCGAACGCGCGTGATCTGGAGTTTGGATGGTC
GTTCATGTGTCCGTCTTCTCCACCGAGCACTG
dot-bracket secondary structure
..((((..((((((((((..((((((((((((((((((((((((((((...))))))).(((((.(((((....)).))).)..))))...)))))))))
))))))))))))..))))))))))..))))..
SIMILARITIES| miRBase sbi-MIR164c: 0.0000000000004 PMRD osa-miR164e: 6e-71 microPC no hits | UniProt no hits RFAM MIR164: 3e-67 |
Identical with: osa-miR164e from PMRD (MNEST048842) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"
