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ABOUT THIS RECORD

ID: MNEST041938
species: Oryza sativa
miRNA family: MIR166
source: miRBase, original name: osa-MIR166b (MI0000671)

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCGGACCAGGCTTCATTCCCC

miRNA*
GGAATGTTGTCTGGCTCGGGG

mismatches: 4
bulges: 0

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pre-miRNA
GGGAGCCTTTTCATTTTGAGGGGAATGTTGTCTGGCTCGGGGCTACTTTTAATTTCTCTCTCTTTTGATATCTTCTTTTCTCGATCTCCTAGCTTGATCT
TTTGATCTCTCAAATCGATCTTAAGAAAAAGATCAGTCAAAGAGATGAGAGTAGATGTCTGTAGATCTCGGACCAGGCTTCATTCCCCCCAAACAGAAGG
GCTCCC


dot-bracket secondary structure
(((((((((((...((((.((((((((..((((((..(((((((((.....(((((((((((((((((((((((..(((((.((((.........((((.
...)))).........))))...))))))))))..))).)))))).))))).))))....)))).)))))..))))))..)))))))).))))..)))))
))))))



SIMILARITIES
miRBase bdi-MIR166b: 8e-16

PMRD osa-miR166b: 1e-48

microPC miR166: 6e-38
UniProt no hits

RFAM mir-166: 1e-39

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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deep sequencing data evidence

references

[1] Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP, Genes Dev. 16:1616-1626(2002)., "MicroRNAs in plants"




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