ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR166
source: miRBase, original name: osa-MIR166c (MI0000672)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCCCC miRNA* GGAATGTTGTCTGGTCCGAGA mismatches: 2 bulges: 0 |
pre-miRNA
GGCAGTTGAGGGGAATGTTGTCTGGTCCGAGACCTAACACCGGGCGGAATGGCGGATTCAGCTGCAGCTAAGCAAGCTAGGTGGGGGGTTTCGGACCAGG
CTTCATTCCCCCCAACTCAACTGTT
dot-bracket secondary structure
.((((((((((((((((..((((((((((((((((..((((.(((.((((.....)))).(((.......)))..))).))))..)))))))))))))))
)..)))))))).....)))))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP, Genes Dev. 16:1616-1626(2002)., "MicroRNAs in plants"
GGCAGTTGAGGGGAATGTTGTCTGGTCCGAGACCTAACACCGGGCGGAATGGCGGATTCAGCTGCAGCTAAGCAAGCTAGGTGGGGGGTTTCGGACCAGG
CTTCATTCCCCCCAACTCAACTGTT
dot-bracket secondary structure
.((((((((((((((((..((((((((((((((((..((((.(((.((((.....)))).(((.......)))..))).))))..)))))))))))))))
)..)))))))).....)))))))).
SIMILARITIES| miRBase hvu-MIR166b: 4e-53 PMRD osa-miR166c: 8e-67 microPC miR166: 7e-52 | UniProt no hits RFAM mir-166: 9e-58 |
Identical with: osa-miR166c from PMRD (MNEST048846) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP, Genes Dev. 16:1616-1626(2002)., "MicroRNAs in plants"
