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ABOUT THIS RECORD

ID: MNEST042125
species: Oryza sativa
miRNA family: MIR441
source: miRBase, original name: osa-MIR809d (MI0005224)

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGAATGTGAGAAATGTTAGAAT

miRNA*
TCTAGCATTTCCCACATTCATA

mismatches: 1
bulges: 0

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pre-miRNA
TTTACAGGTACTCCCTCCGTTTCACAATGTAAGTCATTCTAGCATTTCCCACATTCATATTGATGTTAATGAATCTAGACATAGTTATCTATCTAGATTC
ATTAACATCAATATGAATGTGAGAAATGTTAGAATGACTTACATTGTGAAACGGAGGAAGTAGTAAA


dot-bracket secondary structure
.((((...((((.(((((((((((((((((((((((((((((((((((.((((((((((((((((((((((((((((((..(((....))))))))))))
))))))))))))))))))))).))))))))))))))))))))))))))))))))))).)))))))).



SIMILARITIES
miRBase osa-MIR808: 1e-63

PMRD osa-miR809d: 1e-91

microPC miR809: 3e-30
UniProt sp|Q6K1U0|P2C17_ORYSJ: 0.0002

RFAM MIR1122: 1e-66

Identical with: osa-miR809d from PMRD (MNEST049039)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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evidence: cloned, Northern

references

[1] Luo YC, Zhou H, Li Y, Chen JY, Yang JH, Chen YQ, Qu LH, FEBS Lett. 580:5111-5116(2006)., "Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development"




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