ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR441
source: miRBase, original name: osa-MIR809e (MI0005225)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAATGTGAGAAATGTTAGAAT miRNA* TCTAACATTTCCTACATTTATA mismatches: 1 bulges: 0 |
pre-miRNA
TACTCCCTCCGTTTCACAATGTAAGTTATTCTAACATTTCCTACATTTATATTAATGTTAATGAATCTAGACATCATTAACATCAATATGTCTAGATTTA
TTAACATCAATATGAATGTGAGAAATGTTAGAATAACTTACATTGTGAAACGGATGAAGTA
dot-bracket secondary structure
((((.(.(((((((((((((((((((((((((((((((((.((((((((((((.((((((((((((((((((((.(((......))))))))))))))))
))))))).)))))))))))).))))))))))))))))))))))))))))))))).).))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern
references
[1] Luo YC, Zhou H, Li Y, Chen JY, Yang JH, Chen YQ, Qu LH, FEBS Lett. 580:5111-5116(2006)., "Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development"
TACTCCCTCCGTTTCACAATGTAAGTTATTCTAACATTTCCTACATTTATATTAATGTTAATGAATCTAGACATCATTAACATCAATATGTCTAGATTTA
TTAACATCAATATGAATGTGAGAAATGTTAGAATAACTTACATTGTGAAACGGATGAAGTA
dot-bracket secondary structure
((((.(.(((((((((((((((((((((((((((((((((.((((((((((((.((((((((((((((((((((.(((......))))))))))))))))
))))))).)))))))))))).))))))))))))))))))))))))))))))))).).))))
SIMILARITIES| miRBase osa-MIR809d: 5e-44 PMRD osa-miR809e: 4e-88 microPC miR809: 0.0000000000006 | UniProt no hits RFAM MIR1122: 1e-35 |
Identical with: osa-miR809e from PMRD (MNEST049040) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern
references
[1] Luo YC, Zhou H, Li Y, Chen JY, Yang JH, Chen YQ, Qu LH, FEBS Lett. 580:5111-5116(2006)., "Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development"
