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ABOUT THIS RECORD

ID: MNEST042129
species: Oryza sativa
miRNA family: MIR441
source: miRBase, original name: osa-MIR809h (MI0005228)

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGAATGTGAGAAATGTTAGAAT

miRNA*
TCTAACATTTCCCACATTCATA

mismatches: 1
bulges: 0

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pre-miRNA
GTTTCACAATGTAAGTCATTCTAACATTTCCCACATTCATATTGATGTTAATGAATCTAGACATATATATCTATTTAGATTCATTAAAATCAATATGAAT
GTGAGAAATGTTAGAAT
AACTTACATTGTGAAAC


dot-bracket secondary structure
((((((((((((((((.(((((((((((((.(((((((((((((((.((((((((((((((............)))))))))))))).))))))))))))
))).)))))))))))))
.))))))))))))))))



SIMILARITIES
miRBase osa-MIR809d: 8e-58

PMRD osa-miR809h: 4e-72

microPC miR809: 9e-33
UniProt no hits

RFAM MIR1122: 1e-56

Identical with: osa-miR809h from PMRD (MNEST049043)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern

references

[1] Luo YC, Zhou H, Li Y, Chen JY, Yang JH, Chen YQ, Qu LH, FEBS Lett. 580:5111-5116(2006)., "Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development"




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