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ABOUT THIS RECORD

ID: MNEST042130
species: Oryza sativa
miRNA family: MIR810
source: miRBase, original name: osa-MIR810a (MI0005229)

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCATAAGCCCACCACATGTGG

miRNA*
ACATGTGGTGAGCTTACGATG

mismatches: 2
bulges: 0

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pre-miRNA
AATATTCACTATGGTTGCCATCATAAGCCCACCACATGTGGCTCGCATGCTTAAATAACTAACGGCATAATTAGATCACTTGATGACGACGTATATCGGT
GTTCGCTATATATACTATCTACTGGTAAGTATATATAGCGAACACCGATATGCGTCATCATCAAGTGATTTAATTATGCCGTTAGTTAAGCATGCGAGCC
ACATGTGGTGAGCTTACGATG
ACGACCACAGTTTGTT


dot-bracket secondary structure
.......(((.((((((.((((.(((((.((((((((((((((((((((((((....(((((((((((((((((((((((((((((.(((((((((((((
(((((((((((((((((((....))).))))))))))))))))))))))))))))).)))))))))))))))))))))))))))))))))))))))))))
)))))))))).))))).))))
.)))))).))).....



SIMILARITIES
miRBase osa-MIR810b: 6e-57

PMRD osa-miR810a: 2e-133

microPC no hits
UniProt no hits

RFAM no hits

Identical with: osa-miR810a from PMRD (MNEST049044)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern

references

[1] Luo YC, Zhou H, Li Y, Chen JY, Yang JH, Chen YQ, Qu LH, FEBS Lett. 580:5111-5116(2006)., "Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development"




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