miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Back to search results



ABOUT THIS RECORD

ID: MNEST042134
species: Oryza sativa
miRNA family: MIR811
source: miRBase, original name: osa-MIR811b (MI0005231)

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
ACCGTTAGATCGAGAAATGGACGT

miRNA*
GTTCGTTTCTGGATCCAACGGTAG

mismatches: 2
bulges: 0

View larger
pre-miRNA
GGAAACTTGAAAACTACCGTTAGATCGAGAAATGGACGTCCGAGATTCGTCCACGTCACCATGAGTTAAAATTTAACTCGCAGATTCACTCCTGAGTTAA
ACTTTTACTGGGAGTTAAATTTTAACTCATGGTGACGTGGGCGAATCTCGAACGTTCGTTTCTGGATCCAACGGTAGTTTCCAAGTTTCC


dot-bracket secondary structure
(((((((((.(((((((((((.((((.((((((((((((.(((((((((((((((((((((((((((((((((((((((.((((((((....)))))...
.......))).))))))))))))))))))))))))))))))))))))))).)))))))))))).)))).))))))))))).)))))))))



SIMILARITIES
miRBase osa-MIR811a: 9e-77

PMRD osa-miR811b: 2e-105

microPC no hits
UniProt no hits

RFAM MIR811: 4e-104

Identical with: osa-miR811b from PMRD (MNEST049046)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern

references

[1] Luo YC, Zhou H, Li Y, Chen JY, Yang JH, Chen YQ, Qu LH, FEBS Lett. 580:5111-5116(2006)., "Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development"




Liczniki na strone;