ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR811
source: miRBase, original name: osa-MIR811d (MI0017250)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGACGGATCTCGGATGTCCA miRNA* GACGTCCGAGATTCGTCTACT mismatches: 1 bulges: 0 |
pre-miRNA
TGGAAACTACTGTTAGATCGAACAATAGACGTCCGAGATTCGTCTACTTCATCACGAGTAAAAGTTTTATTAACGGATTTACTGCAAGTAAAATTTTTAC
TCTTGATGATGTGGACGGATCTCGGATGTCCATTTTTTATCCAAAGGTAGTTTCCA
dot-bracket secondary structure
.((((((((((.((.(((.(((.(((.((((((((((((((((((((.((((((.((((((((((((((((..(((.....)))..))))))))))))))
)).)))))).)))))))))))))))))))).))).)))))).)).)))))))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Li T, Li H, Zhang YX, Liu JY, Nucleic Acids Res. [Epub prior to print](2010)., "Identification and analysis of seven H2O2-responsive miRNAs and 32 new miRNAs in the seedlings of rice (Oryza sativa L. ssp. indica)"
TGGAAACTACTGTTAGATCGAACAATAGACGTCCGAGATTCGTCTACTTCATCACGAGTAAAAGTTTTATTAACGGATTTACTGCAAGTAAAATTTTTAC
TCTTGATGATGTGGACGGATCTCGGATGTCCATTTTTTATCCAAAGGTAGTTTCCA
dot-bracket secondary structure
.((((((((((.((.(((.(((.(((.((((((((((((((((((((.((((((.((((((((((((((((..(((.....)))..))))))))))))))
)).)))))).)))))))))))))))))))).))).)))))).)).)))))))))).
SIMILARITIES| miRBase osa-MIR811d: 3e-85 PMRD osa-miRf10867-akr: 0.0000000000001 microPC no hits | UniProt no hits RFAM MIR811: 6e-84 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Li T, Li H, Zhang YX, Liu JY, Nucleic Acids Res. [Epub prior to print](2010)., "Identification and analysis of seven H2O2-responsive miRNAs and 32 new miRNAs in the seedlings of rice (Oryza sativa L. ssp. indica)"
