ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR812
source: miRBase, original name: osa-MIR812b (MI0005234)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GACGGACGGTTAAACGTTGGAC miRNA* CTACGTTTGACCGTTCGTCTT mismatches: 1 bulges: 1 |
pre-miRNA
GTATCCGTATCTACGTTTGACCGTTCGTCTTATTTGAAAATTTTATGAAAAGATTAAAAAAATAGTCACGCATAAAGTAATATTCATGTTTTATCATCTA
ATAACAATAAAAATACTAATCATTAAAAATTTTCAAATAAGACGGACGGTTAAACGTTGGACACGAATAC
dot-bracket secondary structure
((((.(((.(((((((((((((((((((((((((((((((((((((((...(((((......)))))........((((.......((((..........
..)))).......))))..))))..))))))))))))))))))))))))))))))).)))).))).))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern
references
[1] Luo YC, Zhou H, Li Y, Chen JY, Yang JH, Chen YQ, Qu LH, FEBS Lett. 580:5111-5116(2006)., "Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development"
GTATCCGTATCTACGTTTGACCGTTCGTCTTATTTGAAAATTTTATGAAAAGATTAAAAAAATAGTCACGCATAAAGTAATATTCATGTTTTATCATCTA
ATAACAATAAAAATACTAATCATTAAAAATTTTCAAATAAGACGGACGGTTAAACGTTGGACACGAATAC
dot-bracket secondary structure
((((.(((.(((((((((((((((((((((((((((((((((((((((...(((((......)))))........((((.......((((..........
..)))).......))))..))))..))))))))))))))))))))))))))))))).)))).))).))))
SIMILARITIES| miRBase osa-MIR812d: 5e-32 PMRD osa-miR812b: 6e-81 microPC miR812: 3e-18 | UniProt no hits RFAM MIR812: 1e-79 |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern
references
[1] Luo YC, Zhou H, Li Y, Chen JY, Yang JH, Chen YQ, Qu LH, FEBS Lett. 580:5111-5116(2006)., "Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development"
