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ABOUT THIS RECORD

ID: MNEST042327
species: Oryza sativa
miRNA family: MIR2096
source: miRBase, original name: osa-MIR2096 (MI0010556)

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGCCGATTTCCCCCTCGGGCG

miRNA*
CCTGAGGGGAAATCGGCGGG

mismatches: 0
bulges: 1

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pre-miRNA
GACGCCGCACTGCCGATTTCCCCCTCGGGCGAGCCATCGGAGCGGGGGCCGTTGGCTCCCAAAGCAGACGCGAGAATTCACTGAAATTACCGCGCCATCT
TATCTCCGCAAGTTGAAGAATATAATTCGGGCGCAGTAATTTTTAGTGAATTCATGTGTCTACTACTACATATGTCTGCTTGGGAGCCAACCGCGTTTCG
ATGGCTCGCCTGAGGGGAAATCGGCGGGAGGCGTTTG


dot-bracket secondary structure
((((((...((((((((((((((.((((((((((((((((((((.((....(((((((((((.((((((....(((((((((((((((((.(((((....
..((..(....)..)).((((...)))).))))).)))).))))))))))))).(((((........))))).))))))))))))))))))).)))))))
)))))))))))))))))))))))))))..))))))..



SIMILARITIES
miRBase osa-MIR2096: 2e-133

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa

references

[1] Xue LJ, Zhang JJ, Xue HW, Nucleic Acids Res. 37:916-930(2009)., "Characterization and expression profiles of miRNAs in rice seeds"




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