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ABOUT THIS RECORD
ID:
MNEST042329
species:
Oryza sativa
source:
miRBase, original name:
osa-MIR2097
(
MI0010557
)
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
AGAGATGGGACGGGCAGGGAAG
miRNA*
TTCTTCGTGTCGCATTTCTTT
mismatches:
4
bulges:
1
View larger
pre-miRNA
GTGGGGA
AGAGATGGGACGGGCAGGGAAG
GAAGTAGATGGATAGAGTTTGGGGATAGGAGGGAAGGGGATAGATTTGGTTGTTTTTCGGAAAAAAAAAAA
CCTTGTGTTTTTCATGTTTACAGTGCTGCCCCTAAGAGCAGAATTTTCTC
TTCTTCGTGTCGCATTTCTTT
AAAAGC
dot-bracket secondary structure
.....((
(((((((.((((.(.(((((..
((((....((.......(((((((.(((.(.(((..(..(.(.((..((((.(((((......))))).))
))..)).).)..)...)))....).))).)))))))..))....))))..
)))))).)))).)))))))))
......
SIMILARITIES
miRBase
osa-MIR2097
:
6e-78
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
no hits
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
Solexa
references
[
1
] Xue LJ, Zhang JJ, Xue HW,
Nucleic Acids Res. 37:916-930(2009).
,
"Characterization and expression profiles of miRNAs in rice seeds"