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ABOUT THIS RECORD

ID: MNEST042329
species: Oryza sativa
source: miRBase, original name: osa-MIR2097 (MI0010557)

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
AGAGATGGGACGGGCAGGGAAG

miRNA*
TTCTTCGTGTCGCATTTCTTT

mismatches: 4
bulges: 1

View larger
pre-miRNA
GTGGGGAAGAGATGGGACGGGCAGGGAAGGAAGTAGATGGATAGAGTTTGGGGATAGGAGGGAAGGGGATAGATTTGGTTGTTTTTCGGAAAAAAAAAAA
CCTTGTGTTTTTCATGTTTACAGTGCTGCCCCTAAGAGCAGAATTTTCTCTTCTTCGTGTCGCATTTCTTTAAAAGC


dot-bracket secondary structure
.....(((((((((.((((.(.(((((..((((....((.......(((((((.(((.(.(((..(..(.(.((..((((.(((((......))))).))
))..)).).)..)...)))....).))).)))))))..))....))))..)))))).)))).)))))))))......



SIMILARITIES
miRBase osa-MIR2097: 6e-78

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa

references

[1] Xue LJ, Zhang JJ, Xue HW, Nucleic Acids Res. 37:916-930(2009)., "Characterization and expression profiles of miRNAs in rice seeds"




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