ABOUT THIS RECORDspecies: Oryza sativa
source: miRBase, original name: osa-MIR2099 (MI0010559)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAATATGTTTGTACAAGCTTT miRNA* AGCTGTAGCGTTATTCCAG mismatches: 2 bulges: 5 |
pre-miRNA
CTGCTTTGTGAATATGTTTGTACAAGCTTTACAAAGCTGTAGCGTTATTCCAGAGCAGTT
dot-bracket secondary structure
((((((((.((((((((...((((.((((....))))))))))).)))))))))))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Xue LJ, Zhang JJ, Xue HW, Nucleic Acids Res. 37:916-930(2009)., "Characterization and expression profiles of miRNAs in rice seeds"
CTGCTTTGTGAATATGTTTGTACAAGCTTTACAAAGCTGTAGCGTTATTCCAGAGCAGTT
dot-bracket secondary structure
((((((((.((((((((...((((.((((....))))))))))).)))))))))))))..
SIMILARITIES| miRBase osa-MIR2099: 2e-28 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Xue LJ, Zhang JJ, Xue HW, Nucleic Acids Res. 37:916-930(2009)., "Characterization and expression profiles of miRNAs in rice seeds"
