miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

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ABOUT THIS RECORD

ID: MNEST042335
species: Oryza sativa
source: miRBase, original name: osa-MIR2100 (MI0010560)

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTCTCTCAAGTTGCCAAACAAG

miRNA*
GTTTAGGCGGAGTGGGGAGTG

mismatches: 3
bulges: 2

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pre-miRNA
TTCCCTTCTCTCAAGTTGCCAAACAAGCCAAGTTGCCAAACAAGCCGTAGGGTGGGTGGGGAAGATCGGAAGAAGCGGCACTCGATCGCTATTTTTTTTC
TTTTTACCGATCTCTTTCTGTAACCGCTGTTTAGGCGGAGTGGGGAGTGGGAA


dot-bracket secondary structure
.(((((((((.((..((((((((((.((...(((((...((..(((....)))..))(..(.(((((((((((((.(((........))).........)
))))).))))))).)..).))))).))))))).)))))..))))))).)))).



SIMILARITIES
miRBase osa-MIR2100: 2e-58

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa

references

[1] Xue LJ, Zhang JJ, Xue HW, Nucleic Acids Res. 37:916-930(2009)., "Characterization and expression profiles of miRNAs in rice seeds"




Liczniki na strone;