ABOUT THIS RECORDspecies: Oryza sativa
source: miRBase, original name: osa-MIR2103 (MI0010564)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTCCCTCTCCGTGCGCGCTCG miRNA* AGGATGGATGCCGGGAGGGAGAGA mismatches: 1 bulges: 6 |
pre-miRNA
CGGCGCCTTTTTCCCTCTCCGTGCGCGCTCGCCGGCCGGCGAGGATGGATGCCGGGAGGGAGAGACAAGAGGC
dot-bracket secondary structure
....(((((((((((((.(((.((((.((((((....))))))....).)))))))))))))).....)))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Xue LJ, Zhang JJ, Xue HW, Nucleic Acids Res. 37:916-930(2009)., "Characterization and expression profiles of miRNAs in rice seeds"
CGGCGCCTTTTTCCCTCTCCGTGCGCGCTCGCCGGCCGGCGAGGATGGATGCCGGGAGGGAGAGACAAGAGGC
dot-bracket secondary structure
....(((((((((((((.(((.((((.((((((....))))))....).)))))))))))))).....)))))
SIMILARITIES| miRBase no hits PMRD osa-miR2103: 5e-36 microPC no hits | UniProt no hits RFAM no hits |
Identical with: osa-miR2103 from PMRD (MNEST049193) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Xue LJ, Zhang JJ, Xue HW, Nucleic Acids Res. 37:916-930(2009)., "Characterization and expression profiles of miRNAs in rice seeds"
