ABOUT THIS RECORDspecies: Oryza sativa
source: miRBase, original name: osa-MIR2104 (MI0010565)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCGGCGAGGGGATGCGAGCGTG miRNA* CGGTGGCTTCGACCCTCGTCTCG mismatches: 3 bulges: 3 |
pre-miRNA
ACGGGCGCTCACGGTGGCTTCGACCCTCGTCTCGGCCGCGTGCGGTAGTGCGGGAGGCATGCCGTGTGTACCGGCGGCGAGGGGATGCGAGCGTGAGTGC
CTCGG
dot-bracket secondary structure
.((((((((((((.(.((.((..((((((((((((..(((..(((((.(((.....))))))))..))).)))).)))))))))).)).).)))))))))
).)).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Xue LJ, Zhang JJ, Xue HW, Nucleic Acids Res. 37:916-930(2009)., "Characterization and expression profiles of miRNAs in rice seeds"
ACGGGCGCTCACGGTGGCTTCGACCCTCGTCTCGGCCGCGTGCGGTAGTGCGGGAGGCATGCCGTGTGTACCGGCGGCGAGGGGATGCGAGCGTGAGTGC
CTCGG
dot-bracket secondary structure
.((((((((((((.(.((.((..((((((((((((..(((..(((((.(((.....))))))))..))).)))).)))))))))).)).).)))))))))
).)).
SIMILARITIES| miRBase no hits PMRD osa-miR2104: 6e-55 microPC no hits | UniProt no hits RFAM no hits |
Identical with: osa-miR2104 from PMRD (MNEST049194) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Xue LJ, Zhang JJ, Xue HW, Nucleic Acids Res. 37:916-930(2009)., "Characterization and expression profiles of miRNAs in rice seeds"
