ABOUT THIS RECORDspecies: Oryza sativa
source: miRBase, original name: osa-MIR2105 (MI0010566)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGTGATGTGAATGATTCAT miRNA* GATGTATTTCATTAAGAAT mismatches: 3 bulges: 1 |
pre-miRNA
TTTGGATCTGTGATGTATTTCATTAAGAATTTGAGTTGTATTTTTTTGAGAATTTGTGATGTGAATGATTCATTGATTTGGGA
dot-bracket secondary structure
((..((((.((((..((((((((((.((((((..(..(.....)..)..)))))).))))).)))))..)))).))))..)).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Xue LJ, Zhang JJ, Xue HW, Nucleic Acids Res. 37:916-930(2009)., "Characterization and expression profiles of miRNAs in rice seeds"
TTTGGATCTGTGATGTATTTCATTAAGAATTTGAGTTGTATTTTTTTGAGAATTTGTGATGTGAATGATTCATTGATTTGGGA
dot-bracket secondary structure
((..((((.((((..((((((((((.((((((..(..(.....)..)..)))))).))))).)))))..)))).))))..)).
SIMILARITIES| miRBase no hits PMRD osa-miR2105: 2e-29 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Xue LJ, Zhang JJ, Xue HW, Nucleic Acids Res. 37:916-930(2009)., "Characterization and expression profiles of miRNAs in rice seeds"
