ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIR395
source: miRBase, original name: sbi-MIR395a (MI0001534)
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTGAAGTGTTTGGGGGAACTC miRNA* GTTCTCCACAAACTACTTCAGTA mismatches: 1 bulges: 2 |
pre-miRNA
GGTTGGTTGGTTGTCACCTGGAGTTCTCCACAAACTACTTCAGTAGCAACACACACCCCTAGTTTAATGCACCGTGTTTGCATGTTTGTGTGGAGCTGTG
TGTGTACATAGTGAAGTGTTTGGGGGAACTCTGGGTGGCAATCAGCAATT
dot-bracket secondary structure
.....(((((((((((((..(((((((((.(((((.((((((.((...((((((((....(((((.(((((.((((....))))..))))).))))))))
)))))...)).))))))))))))))))))))..)))))))))))))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
GGTTGGTTGGTTGTCACCTGGAGTTCTCCACAAACTACTTCAGTAGCAACACACACCCCTAGTTTAATGCACCGTGTTTGCATGTTTGTGTGGAGCTGTG
TGTGTACATAGTGAAGTGTTTGGGGGAACTCTGGGTGGCAATCAGCAATT
dot-bracket secondary structure
.....(((((((((((((..(((((((((.(((((.((((((.((...((((((((....(((((.(((((.((((....))))..))))).))))))))
)))))...)).))))))))))))))))))))..)))))))))))))....
SIMILARITIES| miRBase zma-MIR395a: 5e-16 PMRD sbi-miR395a: 1e-81 microPC miR395: 0.00003 | UniProt no hits RFAM mir-395: 5e-69 |
Identical with: sbi-miR395a from PMRD (MNEST054473) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
