ABOUT THIS RECORDspecies: Schistosoma mansoni
miRNA family: let-7
source: Huang et al., original name: sma-let-7
Taxonomy by NCBI:
Schistosoma mansoni Schistosoma Schistosomatidae Schistosomatoidea Strigeidida Digenea Trematoda Platyhelminthes Acoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CGAGGTAGTTCGTTGTATAAA miRNA* TACATAACTACTATATTACCGATGAT mismatches: 5 bulges: 5 |
pre-miRNA
GTGGTGAATGCGAGGTAGTTCGTTGTATAAAACCTTACATAACTACTATATTACCGATGATTCATCAAAATATTTTGTCAGTTCTTTCTTC
dot-bracket secondary structure
.((((((((.((.((((((..(((((.(((....))).)))))......))))))..))))))))))........................
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
additional data
download this record
references
[1] Xue X, Sun J, Zhang Q, Wang Z, Huang Y, Pan W, PLoS One. 3:e4034(2008)., "Identification and characterization of novel microRNAs from Schistosoma japonicum"
GTGGTGAATGCGAGGTAGTTCGTTGTATAAAACCTTACATAACTACTATATTACCGATGATTCATCAAAATATTTTGTCAGTTCTTTCTTC
dot-bracket secondary structure
.((((((((.((.((((((..(((((.(((....))).)))))......))))))..))))))))))........................
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
additional data
download this record
references
[1] Xue X, Sun J, Zhang Q, Wang Z, Huang Y, Pan W, PLoS One. 3:e4034(2008)., "Identification and characterization of novel microRNAs from Schistosoma japonicum"
